I wish i could dock the seamoth to the front port where you enter and exit the cyclops and leave the back hold for the prawn. as the seamoth has a entry port on to so docking it with the front port on the cyclops seems logical.
They could make the train like a golf cart the travels through the long tunnel sections of the base. and connects to a building like the moon pool in order to get on and off.
Did you try turning it off and on again?....joking.....try taking the chip out and back in, it may reset it , or even dismantle the scanner room and rebuild it as you get all the parts back, when you dismantle buildings/objects.
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Yep that's basically what's happening to me every time i go out exploring, the ocean floor is missing and i can even go through it and find resources and even see under ground caves.
I have the same problem, was in my moth and bam a wreckage structure spawned around me and now i can't escape.
Need the console or be able to send the devs my save file so they can fix it.