I made one last change to armory, if this doesn't work I'll just scrap the room altogether. I changed how water processing is connected, it now has a ramp on one side and an elevator on the other. The elevator will be set up so that those on the top can fire down on things coming up the elevator.
I say it's a go. <!--emo&:)--><img src='http://www.unknownworlds.com/forums/html/emoticons/smile.gif' border='0' style='vertical-align:middle' alt='smile.gif'><!--endemo--> Further tweaking should be doable within this layout. Good luck with the actual work.
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edited for clarity